5J3E

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA

Halabelian, L.Tempel, W.Li, Y.Bountra, C.Edwards, A.M.Arrowsmith, C.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thymocyte nuclear protein 1
A, B
225Homo sapiensMutation(s): 0 
Gene Names: THYN1 (THY28)
Find proteins for Q9P016 (Homo sapiens)
Go to Gene View: THYN1
Go to UniProtKB:  Q9P016
Entity ID: 2
MoleculeChainsLengthOrganism
5-methylcytosine containing DNAC,D,E,F12Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, B
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
5CM
Query on 5CM
C, D, E, F
DNA LINKINGC10 H16 N3 O7 PDC
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 40.327α = 90.00
b = 73.232β = 91.18
c = 108.201γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
PDB_EXTRACTdata extraction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-20
    Type: Initial release