5J2S

NKR-P1B from Rattus norvegicus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Structure of NKR-P1B from Rattus norvegicus

Vanek, O.Skalova, T.Blaha, J.Duskova, J.Hasek, J.Koval, T.Dohnalek, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Killer cell lectin-like receptor subfamily B member 1B allele A
A, B
149Rattus norvegicusMutation(s): 0 
Gene Names: Klrb1b (Nkrp1b)
Find proteins for A4KWA1 (Rattus norvegicus)
Go to UniProtKB:  A4KWA1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, B
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
6DN
Query on 6DN
A, B
NON-POLYMERC8 H16 N2 O4LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.221 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 60.721α = 90.00
b = 60.721β = 90.00
c = 76.589γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
BALBESphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Czech Science FoundationCzech Republic15-15181S
European Regional Development FundCzech RepublicCZ.1.05/1.1.00/02.0109

Revision History 

  • Version 1.0: 2017-10-11
    Type: Initial release
  • Version 2.0: 2019-04-24
    Type: Data collection, Polymer sequence