5IVU | pdb_00005ivu

Crystal Structure of Streptomyces griseoflavus Cofilin

PDB DOI: https://doi.org/10.2210/pdb5IVU/pdb

Classification: ACTIN-BINDING PROTEIN
Organism(s): Streptomyces griseoflavus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-03-21 Released: 2017-03-29
Deposition Author(s): Schwebach, C., Sotomayor, M., Kudryashov, D.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free:
0.279 (Depositor), 0.270 (DCC)
R-Value Work:
0.225 (Depositor), 0.230 (DCC)
R-Value Observed:
0.228 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Streptomyces griseoflavus Cofilin

Schwebach, C., Kudryashov, D.S.

To be published.

Macromolecule Content

Total Structure Weight: 31.87 kDa
Atom Count: 2,086
Modeled Residue Count: 258
Deposited Residue Count: 282
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cofilin	A, B	141	Streptomyces griseoflavus	Mutation(s): 0
UniProt
Find proteins for D9XKI5 (Streptomyces griseoflavus Tu4000) Explore D9XKI5 Go to UniProtKB: D9XKI5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D9XKI5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free: 0.279 (Depositor), 0.270 (DCC)
R-Value Work: 0.225 (Depositor), 0.230 (DCC)
R-Value Observed: 0.228 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.927	α = 90
b = 65.937	β = 90
c = 70.757	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-03-29

Deposition Author(s):

Kudryashov, D.S.

Revision History (Full details and data files)

Version 1.0: 2017-03-29
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.