5IUQ

Galectin-3c in complex with Bisamido-thiogalactoside derivative 4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.121 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.153 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Controlling protein:ligand complex conformation through tuning of arginine-arene interactions: Synthetic and structural studies with 3-benzamido-2-sulfo-galactosides as galectin-3 ligands

Noresson, A.-L.Aurelius, O.Oberg, C.T.Engstrom, O.Sundin, A.P.Hakansson, M.Logan, D.Leffler, H.Nilsson, U.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Galectin-3
A
138Homo sapiensMutation(s): 0 
Gene Names: LGALS3 (MAC2)
Find proteins for P17931 (Homo sapiens)
Go to Gene View: LGALS3
Go to UniProtKB:  P17931
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
6E1
Query on 6E1

Download SDF File 
Download CCD File 
A
3-deoxy-3-[(2,3,5,6-tetrafluoro-4-methoxybenzene-1-carbonyl)amino]-beta-D-galactopyranosyl 3-deoxy-3-[(2,3,5,6-tetrafluoro-4-methoxybenzene-1-carbonyl)amino]-1-thio-beta-D-galactopyranoside
C28 H28 F8 N2 O12 S
ZLQVWZMNOBVEMR-RIEDQWIWSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.121 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.153 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 36.064α = 90.00
b = 57.553β = 90.00
c = 62.202γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
REFMACphasing
PDB_EXTRACTdata extraction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden621-2009-5326
Swedish Research CouncilSweden621-2012-2978
Olle Engkvist Byggmastare foundationSweden--
Royal Physiographic SocietySweden--
European Community's Seventh Framework Program (FP7-2007-2013)HEALTH F2-2011-256986 project acronym PANACREAS

Revision History 

  • Version 1.0: 2017-03-29
    Type: Initial release
  • Version 1.1: 2018-01-17
    Type: Data collection