5IU6

Crystal structure of E.coli purine nucleoside phosphorylase with 7-deazahypoxanthine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.155 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history

Literature

Crystal structure of Escherichia coli purine nucleoside phosphorylase in complex with 7-deazahypoxanthine.

Timofeev, V.I.Zhukhlistova, N.E.Abramchik, Y.A.Fateev, I.I.Kostromina, M.A.Muravieva, T.I.Esipov, R.S.Kuranova, I.P.

(2018) Acta Crystallogr F Struct Biol Commun 74: 355-362


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Purine nucleoside phosphorylase DeoD-type
A, B, C
237Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: deoD (pup)
EC: 2.4.2.1
Find proteins for P0ABP8 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ABP8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
7HX
Query on 7HX

Download SDF File 
Download CCD File 
A, B, C
7H-pyrrolo[2,3-d]pyrimidin-4-ol
C6 H5 N3 O
FBMZEITWVNHWJW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.155 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 120.370α = 90.00
b = 120.370β = 90.00
c = 238.971γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
SCALAdata scaling
REFMACrefinement
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 2.0: 2018-06-06
    Type: Atomic model, Data collection, Database references
  • Version 2.1: 2018-07-11
    Type: Data collection, Database references