5IT6

Galectin-related protein: an integral member of the network of chicken galectins


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.547 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure.

Garcia Caballero, G.Flores-Ibarra, A.Michalak, M.Khasbiullina, N.Bovin, N.V.Andre, S.Manning, J.C.Vertesy, S.Ruiz, F.M.Kaltner, H.Kopitz, J.Romero, A.Gabius, H.J.

(2016) Biochim.Biophys.Acta 1860: 2285-2297


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Galectin-related protein
A
134Gallus gallusMutation(s): 0 
Gene Names: LGALSL (GRP)
Find proteins for Q5ZHQ2 (Gallus gallus)
Go to Gene View: LGALSL
Go to UniProtKB:  Q5ZHQ2
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
A
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.547 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.171 
  • Space Group: I 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 38.584α = 90.00
b = 106.865β = 90.00
c = 114.087γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
SCALAdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Economy and CompetitivenessSpainBFU2014-55448-P

Revision History 

  • Version 1.0: 2016-07-13
    Type: Initial release
  • Version 1.1: 2016-08-03
    Type: Database references