5IR2

Crystal structure of novel cellulases from microbes associated with the gut ecosystem


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.079 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.142 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of novel cellulases from microbes associated with the gut ecosystem

Chang, C.Mack, J.Jedrzejczak, R.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cellulase
A
222Parabacteroides johnsonii DSM 18315Mutation(s): 1 
Find proteins for B7BGD3 (Parabacteroides johnsonii DSM 18315)
Go to UniProtKB:  B7BGD3
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SRT
Query on SRT

Download SDF File 
Download CCD File 
A
S,R MESO-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-XIXRPRMCSA-N
 Ligand Interaction
NHE
Query on NHE

Download SDF File 
Download CCD File 
A
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
N-CYCLOHEXYLTAURINE; CHES
C8 H17 N O3 S
MKWKNSIESPFAQN-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.079 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.142 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 100.240α = 90.00
b = 100.240β = 90.00
c = 129.698γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-3000phasing
HKL-3000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM115586

Revision History 

  • Version 1.0: 2016-03-23
    Type: Initial release
  • Version 1.1: 2016-08-17
    Type: Structure summary
  • Version 1.2: 2017-09-20
    Type: Author supporting evidence, Derived calculations