5IQL

Crystal structure of YEATS2 YEATS bound to H3K27cr peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

YEATS2 is a selective histone crotonylation reader.

Zhao, D.Guan, H.Zhao, S.Mi, W.Wen, H.Li, Y.Zhao, Y.Allis, C.D.Shi, X.Li, H.

(2016) Cell Res. 26: 629-632


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YEATS domain-containing protein 2
A
133Homo sapiensMutation(s): 0 
Gene Names: YEATS2 (KIAA1197)
Find proteins for Q9ULM3 (Homo sapiens)
Go to Gene View: YEATS2
Go to UniProtKB:  Q9ULM3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Histone H3.1
B
8Homo sapiensMutation(s): 0 
Gene Names: HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J (H3FA, H3FL, H3FC, H3FB, H3FD, H3FI, H3FH, H3FK, H3FF, H3FJ)
Find proteins for P68431 (Homo sapiens)
Go to UniProtKB:  P68431
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
KCR
Query on KCR
B
L-peptide linkingC10 H18 N2 O3LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.204 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 75.791α = 90.00
b = 75.791β = 90.00
c = 119.331γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
HKL-2000data scaling
PHENIXrefinement
MOLREPphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina91519304
MOSTChina2015CB910503

Revision History 

  • Version 1.0: 2016-07-20
    Type: Initial release
  • Version 1.1: 2017-08-30
    Type: Author supporting evidence, Data collection, Derived calculations