5IPF

Crystal structure of Hypoxanthine-guanine phosphoribosyltransferase from Schistosoma mansoni in complex with IMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.232 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

In vitro and in vivo characterization of the multiple isoforms of Schistosoma mansoni hypoxanthine-guanine phosphoribosyltransferases.

Romanello, L.Zeraik, A.E.de Freitas Fernandes, A.Torini, J.R.Bird, L.E.Nettleship, J.E.Rada, H.Reddivari, Y.Owens, R.J.Serrao, V.H.B.DeMarco, R.Brandao-Neto, J.Pereira, H.D.

(2019) Mol. Biochem. Parasitol. 229: 24-34


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypoxanthine-guanine phosphoribosyltransferase (HGPRT)
A, B, C, D
250Schistosoma mansoniMutation(s): 0 
Gene Names: HGPRT
EC: 2.4.2.8
Find proteins for P09383 (Schistosoma mansoni)
Go to UniProtKB:  P09383
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IMP
Query on IMP

Download SDF File 
Download CCD File 
A, B, C, D
INOSINIC ACID
C10 H13 N4 O8 P
GRSZFWQUAKGDAV-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.232 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 59.953α = 90.00
b = 117.957β = 90.00
c = 139.366γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
xia2data scaling
xia2data reduction
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research FoundationBrazil2012/14223-9
Brazilian National Council for Scientific and Technological DevelopmentBrazil474402/2013-4

Revision History 

  • Version 1.0: 2017-03-15
    Type: Initial release
  • Version 1.1: 2019-03-27
    Type: Data collection, Database references
  • Version 2.0: 2019-04-17
    Type: Author supporting evidence, Data collection, Polymer sequence