5IM7

Crystal structure of HLA-B5801, a protective HLA allele for HIV-1 infection


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.502 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of HLA-B*5801, a protective HLA allele for HIV-1 infection.

Li, X.Lamothe, P.A.Ng, R.Xu, S.Teng, M.Walker, B.D.Wang, J.H.

(2016) Protein Cell 7: 761-765


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA-B*58:01 Heavy Chain
A, C
277Homo sapiensMutation(s): 0 
Gene Names: HLA-B (HLAB)
Find proteins for P10319 (Homo sapiens)
Go to Gene View: HLA-B
Go to UniProtKB:  P10319
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, D
99Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
GLN-ALA-SER-GLN-GLU-VAL-LYS-ASN-TRP
E, F
9Human immunodeficiency virus type 1 group M subtype BMutation(s): 0 
Gene Names: gag-pol
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P04585
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.502 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.193 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 69.439α = 90.00
b = 81.956β = 90.00
c = 157.123γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
PDB_EXTRACTdata extraction
HKL-2000data scaling
HKL-2000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-03-05 
  • Released Date: 2016-10-05 
  • Deposition Author(s): Li, X., Wang, J.-H.

Funding OrganizationLocationGrant Number
Ragon Institute of MGH, MIT and HarvardUnited States--

Revision History 

  • Version 1.0: 2016-10-05
    Type: Initial release
  • Version 1.1: 2016-10-19
    Type: Database references