5IKD

Asymmetric sulfoxidation by engineering the heme pocket of a dye-decolorizing peroxidase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.109 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.149 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Asymmetric sulfoxidation by engineering the heme pocket of a dye-decolorizing peroxidase

Linde, D.Canellas, M.Davo-Siguero, I.Romero, A.Lucas, F.Ruiz-Duenas, F.J.Guallar, V.Martinez, A.T.

(2016) Catalysis Science And Technology --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dye-decolorizing peroxidase
A
446Auricularia auricula-judaeMutation(s): 1 
Gene Names: dyp1
EC: 1.11.1.19, 1.11.1.7
Find proteins for I2DBY1 (Auricularia auricula-judae)
Go to UniProtKB:  I2DBY1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.109 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.149 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 104.928α = 90.00
b = 56.065β = 97.03
c = 82.709γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHENIXrefinement
XDSdata reduction
PHASERphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBFU2014-55448-P

Revision History 

  • Version 1.0: 2016-07-13
    Type: Initial release
  • Version 2.0: 2017-09-06
    Type: Atomic model, Author supporting evidence