5IJM | pdb_00005ijm

Crystal Structure of an Acyl-CoA Binding Protein (LmjF.17.0620) of Leishmania major

PDB DOI: https://doi.org/10.2210/pdb5IJM/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Leishmania major
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2016-03-02 Released: 2017-03-08
Deposition Author(s): Dangi, R.S., Pal, R.K., Sundd, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.46 Å
R-Value Free:
0.177 (Depositor), 0.180 (DCC)
R-Value Work:
0.160 (Depositor), 0.160 (DCC)
R-Value Observed:
0.161 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of an Acyl-CoA Binding Protein (LmjF.17.0620) of Leishmania major

Dangi, R.S., Pal, R.K., Sundd, M.

To be published.

Macromolecule Content

Total Structure Weight: 11.76 kDa
Atom Count: 935
Modeled Residue Count: 98
Deposited Residue Count: 106
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	106	Leishmania major	Mutation(s): 1 Gene Names: LMJF_17_0620
UniProt
Find proteins for Q4QED2 (Leishmania major) Explore Q4QED2 Go to UniProtKB: Q4QED2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q4QED2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.46 Å
R-Value Free: 0.177 (Depositor), 0.180 (DCC)
R-Value Work: 0.160 (Depositor), 0.160 (DCC)
R-Value Observed: 0.161 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 26.989	α = 103.81
b = 29.076	β = 110.42
c = 33.778	γ = 95

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-03-08

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-03-08
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.