5IIE

STRUCTURE OF THE UNLIGANDED ANTI-HIV ANTIBODY DH501 THAT BINDS GP120 V3 GLYCAN AND THE BASE OF V3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

HIV Envelope vaccination elicits asparagine 332 glycan-dependent antibodies that resemble broadly neutralizing antibody precursors

Saunders, K.O.Nicely, N.I.Aussedat, B.Wiehe, K.Parks, R.Vohra, Y.Walkowicz, W.E.Park, P.K.Eaton, A.Sutherland, L.L.Scearce, R.Wu, N.Bonsignori, M.Meyerhoff, R.R.Lloyd, K.E.Stolarchuk, C.Foulger, A.Anasti, K.Moody, M.A.Barouch, D.Korber, B.T.Santra, S.Letvin, N.Montefiori, D.C.Tomaras, G.D.Liao, H.-X.Alam, S.M.Danishefsky, S.J.Haynes, B.F.

(2017) Cell Rep --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
antibody DH501 FabH chain
H, A
230N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
antibody DH501 light chain
L, B
216N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.206 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 76.113α = 90.00
b = 89.028β = 90.00
c = 132.131γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited States--

Revision History 

  • Version 1.0: 2017-03-01
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence