5IFN | pdb_00005ifn

Human PSPC1 Homodimer

PDB DOI: https://doi.org/10.2210/pdb5IFN/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-02-26 Released: 2017-08-09
Deposition Author(s): Knott, G.J., Passon, D.M., Bond, C.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.17 Å
R-Value Free:
0.289 (Depositor), 0.300 (DCC)
R-Value Work:
0.237 (Depositor), 0.270 (DCC)
R-Value Observed:
0.239 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Human PSPC1 Homodimer

Knott, G.J., Passon, D.M., Bond, C.S.

To be published.

Macromolecule Content

Total Structure Weight: 59.89 kDa
Atom Count: 4,112
Modeled Residue Count: 509
Deposited Residue Count: 520
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Paraspeckle component 1	A, B	260	Homo sapiens	Mutation(s): 0 Gene Names: PSPC1, PSP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WXF1 (Homo sapiens) Explore Q8WXF1 Go to UniProtKB: Q8WXF1
PHAROS: Q8WXF1 GTEx: ENSG00000121390
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8WXF1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.17 Å
R-Value Free: 0.289 (Depositor), 0.300 (DCC)
R-Value Work: 0.237 (Depositor), 0.270 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.536	α = 90
b = 63.493	β = 98.06
c = 67.8	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-08-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-08-09
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.