5IF2

Crystal structure of polymerase acid protein (PA) from Influenza A virus, WILSON-SMITH/1933 (H1N1) bound to fragment hit EBSI-576 (5,6-dichloro-1H-1,3-benzodiazol-2-yl)methanol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Fragment screening by STD NMR identifies novel site binders against influenza A virus polymerase PA

Pierce, P.Muruthi, M.M.Abendroth, J.Moen, S.O.Begley, D.W.Davies, D.R.Marathias, V.M.Staker, B.L.Myler, P.J.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polymerase acidic protein
A
464Influenza A virus (strain A/Wilson-Smith/1933 H1N1)Mutation(s): 0 
Gene Names: PA
EC: 3.1.-.-
Find proteins for P15659 (Influenza A virus (strain A/Wilson-Smith/1933 H1N1))
Go to UniProtKB:  P15659
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
DMS
Query on DMS

Download SDF File 
Download CCD File 
A
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
6B1
Query on 6B1

Download SDF File 
Download CCD File 
A
(5,6-dichloro-1H-benzimidazol-2-yl)methanol
C8 H6 Cl2 N2 O
GOUGSJWBRLTBDO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.176 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 68.890α = 90.00
b = 68.890β = 90.00
c = 396.920γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-02-22
    Type: Initial release