5IEK

Structure of HLA-B*40:02 in complex with the endogenous peptide REFSKEPEL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of HLA-B*40:02 in complex with the endogenous peptide REFSKEPEL

Alpizar, A.Marcilla, M.Santiago, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, B-40 alpha chain
A
277Homo sapiensMutation(s): 0 
Gene Names: HLA-B (HLAB)
Find proteins for Q04826 (Homo sapiens)
Go to Gene View: HLA-B
Go to UniProtKB:  Q04826
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B
100Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ARG-GLU-PHE-SER-LYS-GLU-PRO-GLU-LEU
C
9Homo sapiensMutation(s): 0 
Gene Names: INCENP
Find proteins for Q9NQS7 (Homo sapiens)
Go to Gene View: INCENP
Go to UniProtKB:  Q9NQS7
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.162 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 51.260α = 90.00
b = 82.201β = 90.00
c = 111.145γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-12-07
    Type: Initial release
  • Version 1.1: 2018-03-07
    Type: Source and taxonomy