Structure of HLA-B*40:02 in complex with the endogenous peptide REFSKEPEL
Alpizar, A., Marcilla, M., Santiago, C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class I histocompatibility antigen, B-40 alpha chain | 277 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-B, HLAB | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01889 (Homo sapiens) Explore P01889  Go to UniProtKB:  P01889 | |||||
PHAROS:  P01889 GTEx:  ENSG00000234745  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01889 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 100 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, CDABP0092, HDCMA22P | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ARG-GLU-PHE-SER-LYS-GLU-PRO-GLU-LEU | 9 | Homo sapiens | Mutation(s): 0  | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NQS7 (Homo sapiens) Explore Q9NQS7  Go to UniProtKB:  Q9NQS7 | |||||
PHAROS:  Q9NQS7 GTEx:  ENSG00000149503  | |||||
Entity Groups   | |||||
UniProt Group | Q9NQS7 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 51.26 | α = 90 |
b = 82.201 | β = 90 |
c = 111.145 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |