5IDZ

Structure of Human Enolase 2 in complex with (S)-(1-hydroxy-2-oxopiperidin-3-yl)phosphonate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Pomhex, a cell-permeable Enolase inhibitor for Collateral Lethality targeting of ENO1-deleted Glioblastoma

Lin, Y.H.Satani, N.Hammoudi, N.Felini, F.Leonard, P.G.Maxwell, D.Link, T.Lee, G.R.Bosajou, A.Duoli, S.Marszalek, J.R.Sun, Y.T.McMurray, J.Mandal, P.J.DiFrancesco, M.E.Czako, B.Wang, A.Bornmann, W.DePinho, R.A.Muller, F.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Gamma-enolase
A, B
440Homo sapiensMutation(s): 0 
Gene Names: ENO2
EC: 4.2.1.11
Find proteins for P09104 (Homo sapiens)
Go to Gene View: ENO2
Go to UniProtKB:  P09104
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
6BM
Query on 6BM

Download SDF File 
Download CCD File 
A, B
[(3S)-1-hydroxy-2-oxopiperidin-3-yl]phosphonic acid
C5 H10 N O5 P
DVZQUMSQEGOYMX-BYPYZUCNSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
A, B
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.162 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 68.100α = 90.00
b = 108.740β = 90.00
c = 116.460γ = 90.00
Software Package:
Software NamePurpose
iMOSFLMdata reduction
PDB_EXTRACTdata extraction
PHENIXrefinement
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Prevention and Research Institute of TexasUnited StatesRP140612
American Cancer SocietyUnited States365082

Revision History 

  • Version 1.0: 2017-02-22
    Type: Initial release
  • Version 1.1: 2019-04-24
    Type: Author supporting evidence, Data collection