5IBV

Crystal Structure of Human Astrovirus capsid protein

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history. 

Literature

Crystal Structure of the Human Astrovirus Capsid Protein.

Toh, Y., Harper, J., Dryden, K.A., Yeager, M., Arias, C.F., Mendez, E., Tao, Y.J.

(2016) J.Virol. 90: 9008-9017


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid polyprotein VP90
A
354Human astrovirus-8Mutation(s): 0 
Find proteins for Q9IFX1 (Human astrovirus-8)
Go to UniProtKB:  Q9IFX1
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.209 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 51.983α = 90.00
b = 59.236β = 91.45
c = 56.197γ = 90.00
Software Package:
Software NamePurpose
PHASESphasing
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-02-22 
  • Released Date: 2016-08-03 
  • Deposition Author(s): Tao, Y.J., Toh, Y.S.
Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI103777
Welch FoundationUnited StatesC-1565

Revision History 

  • Version 1.0: 2016-08-03
    Type: Initial release
  • Version 1.1: 2016-08-10
    Type: Database references
  • Version 1.2: 2016-10-12
    Type: Database references
  • Version 1.3: 2017-09-20
    Type: Author supporting evidence, Database references, Derived calculations, Refinement description