5I9D

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8A2 in complex with its target RNA U8A2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.596 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.267 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of RNA binding protein with target RNA

Shen, C.Zhang, D.Guan, Z.Liu, Y.Yang, Z.Yang, Y.Wang, X.Wang, Q.Zhang, Q.X.Fan, S.Zou, T.Yin, P.

(2016) Nat Commun --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
pentatricopeptide repeat protein dPPR-U8A2
A
460N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(*GP*GP*GP*G*UP*UP*UP*UP*AP*AP*UP*UP*UP*UP*CP*CP*CP*C)-3')B18synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.596 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.267 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 52.546α = 90.00
b = 84.904β = 90.00
c = 95.899γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
HKL-3000data collection
XDSdata processing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-27
    Type: Initial release