5I8O

HMM5 Fab in complex with disaccharide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of HMM5 Fab with a bound disaccharide

Plum, M.Bantleon, F.Tjerrild, L.Raiber, T.Eckenberger, J.Wolf, S.Miehe, M.Jabs, F.Greunke, K.Seismann, H.Jakob, T.Andersen, G.R.Spillner, E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HMM5 antibody heavy chain
H
219N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HMM5 antibody light chain
L
217N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FUC
Query on FUC

Download SDF File 
Download CCD File 
H
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
2F8
Query on 2F8

Download SDF File 
Download CCD File 
H
methyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside
C9 H17 N O6
ZEVOCXOZYFLVKN-OKNNCHMLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.164 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 63.447α = 90.00
b = 63.587β = 90.00
c = 108.771γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
Novo Nordisk FoundationDenmark--

Revision History 

  • Version 1.0: 2016-03-23
    Type: Initial release