5I7D | pdb_00005i7d

Crystal Structure of srGAP2 F-BARx WT Form-2

• PDB DOI: https://doi.org/10.2210/pdb5I7D/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2016-02-17 Released: 2017-08-30 
• Deposition Author(s): Sporny, M., Guez-Haddad, J., Isupov, M.N., Opatowsky, Y.
• Funding Organization(s): ISF, BSF

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.95 Å
• R-Value Free: 
  0.349 (Depositor), 0.350 (DCC) 
• R-Value Work: 
  0.277 (Depositor), 0.280 (DCC) 
• R-Value Observed: 
  0.280 (Depositor) 

Literature

Structural Basis for srGAP2 Membrane Interactions, and Antagonism by the Human Specific Paralog srGAP2C

Sporny, M., Guez-Haddad, J., Isupov, M.N., Opatowsky, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 113.11 kDa 
• Atom Count: 6,714 
• Modeled Residue Count: 818 
• Deposited Residue Count: 968 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SLIT-ROBO Rho GTPase-activating protein 2	A, B	484	Homo sapiens	Mutation(s): 0  Gene Names: SRGAP2, ARHGAP34, FNBP2, KIAA0456, SRGAP2A
UniProt & NIH Common Fund Data Resources
Find proteins for O75044 (Homo sapiens) Explore O75044  Go to UniProtKB:  O75044
PHAROS:  O75044 GTEx:  ENSG00000266028

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.95 Å
• R-Value Free:  0.349 (Depositor), 0.350 (DCC) 
• R-Value Work:  0.277 (Depositor), 0.280 (DCC) 
• R-Value Observed: 0.280 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.904	α = 90
b = 49.926	β = 102.57
c = 234.084	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-08-30 
Deposition Author(s): Sporny, M., Guez-Haddad, J., Isupov, M.N., Opatowsky, Y.

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Funding Organization	Location	Grant Number
ISF	Israel	182/10 and 1425/15
BSF	Israel	2013310

Revision History  

• Version 1.0: 2017-08-30
  Type: Initial release
  
• Version 1.1: 2019-10-16
  Changes: Data collection
• Version 1.2: 2019-12-11
  Changes: Derived calculations
• Version 1.3: 2024-05-08
  Changes: Data collection, Database references, Refinement description