5I4F

scFv 2D10 complexed with alpha 1,6 mannobiose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.549 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Antibodies Can Exploit Molecular Crowding to Bind New Antigens at Noncanonical Paratope Positions

Vashisht, S.Kumar, A.Kaur, K.J.Salunke, D.M.

(2016) CHEMISTRYSELECT 1: 6287-6292


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
scFv 2D10
A
251N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
6DM
Query on 6DM

Download SDF File 
Download CCD File 
A
6-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose
alpha 1,6 mannobiose
C12 H22 O11
DLRVVLDZNNYCBX-ONPLHCRPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.549 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.167 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 81.093α = 90.00
b = 81.093β = 90.00
c = 74.388γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data reduction
HKL-3000data scaling
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-12-21
    Type: Initial release