Download MendeleyCrystal structure of 3C protease from a mild Human enterovirus 71 in complex with rupintrivir
Li, B., Yue, Y., Zhang, Y., Yuan, Z., Liu, Y., Li, P., Song, N., Li, Z., Gu, L., Qin, L.To be published.
5HXF
Crystal structure of 3C protease from a mild Human enterovirus 71 in complex with rupintrivir
- PDB DOI: https://doi.org/10.2210/pdb5HXF/pdb
- Classification: HYDROLASE
- Organism(s): Enterovirus A71
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-01-30 Released: 2017-02-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.39 Å
- R-Value Free: 0.199
- R-Value Work: 0.174
- R-Value Observed: 0.176
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3C protease | 184 | Enterovirus A71 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for B8YLW0 (Human enterovirus 71) Explore B8YLW0 Go to UniProtKB: B8YLW0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B8YLW0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AG7 Query on AG7 | B [auth A] | 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER C31 H41 F N4 O7 LMIUALQNZXJHOG-IFILWLFVSA-N |  | ||
| SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.39 Å
- R-Value Free: 0.199
- R-Value Work: 0.174
- R-Value Observed: 0.176
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.209 | α = 90 |
| b = 64.781 | β = 113.06 |
| c = 38.323 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-2000 | phasing |
Entry History
Revision History (Full details and data files)
- Version 1.0: 2017-02-15
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description
