5HUF

The crystal structure of hemagglutinin from A/gyrfalcon/Washington/41088-6/2014 influenza virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.228 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Molecular Characterizations of Surface Proteins Hemagglutinin and Neuraminidase from Recent H5Nx Avian Influenza Viruses.

Yang, H.Carney, P.J.Mishin, V.P.Guo, Z.Chang, J.C.Wentworth, D.E.Gubareva, L.V.Stevens, J.

(2016) J.Virol. 90: 5770-5784


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
hemagglutinin HA1
A, C, E
334Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for A0A0C4X0C0 (Influenza A virus)
Go to UniProtKB:  A0A0C4X0C0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
hemagglutinin HA2
B, D, F
181Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for A0A0C4X0C0 (Influenza A virus)
Go to UniProtKB:  A0A0C4X0C0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAN
Query on MAN

Download SDF File 
Download CCD File 
A, C, E
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E, F
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.228 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 125.328α = 90.00
b = 252.385β = 90.00
c = 70.623γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PDB_EXTRACTdata extraction
REFMACrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-13
    Type: Initial release
  • Version 1.1: 2016-04-20
    Type: Database references
  • Version 1.2: 2016-06-08
    Type: Database references