5HQO

Crystal structure of IrCp*/I-Pd(allyl)-apo-rHLFr


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Immobilization of two organometallic complexes into a single cage to construct protein-based microcompartments

Maity, B.Fukumori, K.Abe, S.Ueno, T.

(2016) Chem.Commun.(Camb.) 52: 5463-5466

  • DOI: 10.1039/c6cc00679e
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Natural protein-based microcompartments containing multiple enzymes promote cascade reactions within cells. We use the apo-ferritin protein cage to mimic such biocompartments by immobilizing two organometallic Ir and Pd complexes into the single prot ...

    Natural protein-based microcompartments containing multiple enzymes promote cascade reactions within cells. We use the apo-ferritin protein cage to mimic such biocompartments by immobilizing two organometallic Ir and Pd complexes into the single protein cage. Precise locations of the metals and their accumulation mechanism were studied by X-ray crystallography.


    Organizational Affiliation

    Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, B-55, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan. tueno@bio.titech.ac.jp.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ferritin light chain
A
174Equus caballusMutation(s): 0 
Gene Names: FTL
Find proteins for P02791 (Equus caballus)
Go to Gene View: FTL
Go to UniProtKB:  P02791
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PD
Query on PD

Download SDF File 
Download CCD File 
A
PALLADIUM ION
Pd
MUJIDPITZJWBSW-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
IR
Query on IR

Download SDF File 
Download CCD File 
A
IRIDIUM ION
Ir
MOHYGSBMXIJZBJ-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
PLL
Query on PLL

Download SDF File 
Download CCD File 
A
Palladium(II) allyl complex
C3 H5 Pd
WTWGCTVOVPTEEU-CPNWEVAQAE
 Ligand Interaction
CD
Query on CD

Download SDF File 
Download CCD File 
A
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.180 
  • Space Group: F 4 3 2
Unit Cell:
Length (Å)Angle (°)
a = 180.877α = 90.00
b = 180.877β = 90.00
c = 180.877γ = 90.00
Software Package:
Software NamePurpose
MOLREPdata reduction
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-20
    Type: Initial release