5HPW

Mode of binding of antithyroid drug, propylthiouracil to lactoperoxidase: Binding studies and structure determination


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.260 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Mode of binding of antithyroid drug, propylthiouracil to lactoperoxidase: Binding studies and structure determination

Singh, R.P.Singh, A.Sharma, P.Kaur, P.Sharma, S.Singh, T.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lactoperoxidase
A, B, C, D
595Capra hircusMutation(s): 0 
Gene Names: LPO
Find proteins for A3F9D6 (Capra hircus)
Go to Gene View: LPO
Go to UniProtKB:  A3F9D6
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

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Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

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Download CCD File 
A, B, C, D
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
3CJ
Query on 3CJ

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Download CCD File 
A, B, C, D
6-propyl-2-thioxo-2,3-dihydropyrimidin-4(1H)-one
C7 H10 N2 O S
KNAHARQHSZJURB-UHFFFAOYSA-N
 Ligand Interaction
NO3
Query on NO3

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Download CCD File 
A, B, C, D
NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

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Download CCD File 
A, B, C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.260 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 80.221α = 80.91
b = 82.588β = 73.71
c = 95.083γ = 89.96
Software Package:
Software NamePurpose
SCALEPACKdata scaling
AMoREphasing
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-20
    Type: Initial release