5HO9

Structure of truncated AbnA (domains 1-3), a GH43 arabinanase from Geobacilllus stearothermophilus, in complex with arabinooctaose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.845 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of truncated AbnA (domains 1-3), a GH43 arabinanase from Geobacilllus stearothermophilus, in complex with arabinooctaose

Lansky, S.Salama, R.Shwartstien, O.Shoham, Y.Shoham, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Extracellular arabinanase
A, B
639Geobacillus stearothermophilusMutation(s): 0 
Gene Names: abnA
Find proteins for B3EYN2 (Geobacillus stearothermophilus)
Go to UniProtKB:  B3EYN2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
AHR
Query on AHR

Download SDF File 
Download CCD File 
A, B
ALPHA-L-ARABINOFURANOSE
C5 H10 O5
HMFHBZSHGGEWLO-QMKXCQHVSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A, B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.845 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.183 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 129.172α = 90.00
b = 129.172β = 90.00
c = 488.364γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-02-01
    Type: Initial release