5HM8

2.85 Angstrom Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with Adenosine and NAD.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.174 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

2.85 Angstrom Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with Adenosine and NAD.

Minasov, G.Shuvalova, L.Halavaty, A.Kiryukhina, O.Dubrovska, I.Bishop, B.Kwon, K.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AdenosylhomocysteinaseA, B, C, D, E, F, G, H498Cryptosporidium parvum Iowa IIMutation(s): 0 
Gene Names: cgd3_80
EC: 3.3.1.1
Find proteins for Q5CPH1 (Cryptosporidium parvum (strain Iowa II))
Explore Q5CPH1 
Go to UniProtKB:  Q5CPH1
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD
Query on NAD

Download Ideal Coordinates CCD File 
AA [auth D], GA [auth E], J [auth A], KA [auth F], OA [auth G], P [auth B], UA [auth H], V [auth C]NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
ADN
Query on ADN

Download Ideal Coordinates CCD File 
FA [auth E], I [auth A], JA [auth F], NA [auth G], O [auth B], TA [auth H], U [auth C], Z [auth D]ADENOSINE
C10 H13 N5 O4
OIRDTQYFTABQOQ-KQYNXXCUSA-N
 Ligand Interaction
SO4
Query on SO4

Download Ideal Coordinates CCD File 
IA [auth E], N [auth A], SA [auth G], T [auth B], Y [auth C]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
BA [auth D] , CA [auth D] , DA [auth D] , EA [auth D] , HA [auth E] , K [auth A] , L [auth A] , LA [auth F] , 
BA [auth D],  CA [auth D],  DA [auth D],  EA [auth D],  HA [auth E],  K [auth A],  L [auth A],  LA [auth F],  M [auth A],  MA [auth F],  PA [auth G],  Q [auth B],  QA [auth G],  R [auth B],  RA [auth G],  S [auth B],  VA [auth H],  W [auth C],  X [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 107.837α = 90
b = 185.31β = 97.85
c = 122.439γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
BALBESphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-01-27
    Type: Initial release