5HH6

Crystal structure of B3 metallo-beta-lactamase L1 in complex with a phosphonate-based inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis of metallo-beta-lactamase inhibition by phosphonates

Hinchliffe, P.Tanner, C.A.Labbe, G.Goodfellow, V.J.Krismanich, A.P.Whittle, E.E.Spencer, J.Dmitrienko, G.I.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Metallo-beta-lactamase L1
A
271Stenotrophomonas maltophiliaMutation(s): 0 
EC: 3.5.2.6
Find proteins for P52700 (Stenotrophomonas maltophilia)
Go to UniProtKB:  P52700
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
60N
Query on 60N

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Download CCD File 
A
6-[(~{S})-oxidanyl(phosphono)methyl]pyridine-2-carboxylic acid
C7 H8 N O6 P
BMLFSBIYIPWZDN-ZETCQYMHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.158 
  • Space Group: P 64 2 2
Unit Cell:
Length (Å)Angle (°)
a = 105.347α = 90.00
b = 105.347β = 90.00
c = 98.835γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomG1100135
National Institute of Allergy and Infectious Diseases of the U.S. National Institutes of HealthUnited StatesR01AI100560

Revision History 

  • Version 1.0: 2017-01-18
    Type: Initial release
  • Version 1.1: 2017-02-01
    Type: Structure summary
  • Version 1.2: 2017-09-13
    Type: Author supporting evidence