5HGR

Structure of Anabaena (Nostoc) sp. PCC 7120 Orange Carotenoid Protein binding canthaxanthin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.170 
  • R-Value Observed: 0.171 

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This is version 1.2 of the entry. See complete history


Literature

Different Functions of the Paralogs to the N-Terminal Domain of the Orange Carotenoid Protein in the Cyanobacterium Anabaena sp. PCC 7120.

Lopez-Igual, R.Wilson, A.Leverenz, R.L.Melnicki, M.R.Bourcier de Carbon, C.Sutter, M.Turmo, A.Perreau, F.Kerfeld, C.A.Kirilovsky, D.

(2016) Plant Physiol 171: 1852-1866

  • DOI: https://doi.org/10.1104/pp.16.00502
  • Primary Citation of Related Structures:  
    5HGR

  • PubMed Abstract: 

    The photoactive Orange Carotenoid Protein (OCP) is involved in cyanobacterial photoprotection. Its N-terminal domain (NTD) is responsible for interaction with the antenna and induction of excitation energy quenching, while the C-terminal domain is the regulatory domain that senses light and induces photoactivation. In most nitrogen-fixing cyanobacterial strains, there are one to four paralogous genes coding for homologs to the NTD of the OCP. The functions of these proteins are unknown. Here, we study the expression, localization, and function of these genes in Anabaena sp. PCC 7120. We show that the four genes present in the genome are expressed in both vegetative cells and heterocysts but do not seem to have an essential role in heterocyst formation. This study establishes that all four Anabaena NTD-like proteins can bind a carotenoid and the different paralogs have distinct functions. Surprisingly, only one paralog (All4941) was able to interact with the antenna and to induce permanent thermal energy dissipation. Two of the other Anabaena paralogs (All3221 and Alr4783) were shown to be very good singlet oxygen quenchers. The fourth paralog (All1123) does not seem to be involved in photoprotection. Structural homology modeling allowed us to propose specific features responsible for the different functions of these soluble carotenoid-binding proteins.


  • Organizational Affiliation

    Institute for Integrative Biology of the Cell (I2BC), Commissariat à l'Energie Atomique, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif sur Yvette, France (R.L.-I., A.W., C.B.d.C., D.K.);Institut de Biologie et Technologies de Saclay (iBiTec-S), Commissariat à l'Energie Atomique, 91191 Gif-sur-Yvette, France (R.L.-I., A.W., C.B.d.C., D.K.);MSU-DOE Plant Research Laboratory and Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., M.S., A.T., C.A.K.);Department of Plant and Microbial Biology, University of California, Berkeley, California 94720 (M.R.M., C.A.K.);Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720 (M.R.M., M.S., C.A.K.); andINRA, Institut Jean-Pierre Bourgin, UMR 1318, ERL CNRS 3559, Saclay Plant Sciences, F-78026 Versailles, France (F.P.).


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Orange Carotenoid Protein (OCP)
A, B
325Nostoc sp. PCC 7120 = FACHB-418Mutation(s): 0 
Gene Names: all3149
UniProt
Find proteins for Q8YSD9 (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
Explore Q8YSD9 
Go to UniProtKB:  Q8YSD9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8YSD9
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.170 
  • R-Value Observed: 0.171 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.989α = 93.23
b = 53.371β = 112.93
c = 65.043γ = 93.09
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-16
    Type: Initial release
  • Version 1.1: 2016-12-07
    Changes: Other
  • Version 1.2: 2024-03-06
    Changes: Data collection, Database references