5HDT

Human cohesin regulator Pds5B bound to a Wapl peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.711 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the human cohesin regulator Pds5 in complex with Wapl motif

Ouyang, Z.Tomchick, D.R.Yu, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sister chromatid cohesion protein PDS5 homolog B
A, B
1111Homo sapiensMutation(s): 1 
Gene Names: PDS5B (APRIN, AS3, KIAA0979)
Find proteins for Q9NTI5 (Homo sapiens)
Go to Gene View: PDS5B
Go to UniProtKB:  Q9NTI5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Wings apart-like protein homolog
E
33Homo sapiensMutation(s): 0 
Gene Names: WAPL (FOE, KIAA0261, WAPAL)
Find proteins for Q7Z5K2 (Homo sapiens)
Go to Gene View: WAPL
Go to UniProtKB:  Q7Z5K2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IHP
Query on IHP

Download SDF File 
Download CCD File 
A, B
INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.711 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.216 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 120.760α = 90.00
b = 162.368β = 90.00
c = 173.061γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-3000data scaling
HKL-3000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence, Derived calculations