5HDT

Human cohesin regulator Pds5B bound to a Wapl peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the human cohesin regulator Pds5 in complex with Wapl motif

Ouyang, Z.Tomchick, D.R.Yu, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Sister chromatid cohesion protein PDS5 homolog BA, B1111Homo sapiensMutation(s): 1 
Gene Names: PDS5BAPRINAS3KIAA0979
Find proteins for Q9NTI5 (Homo sapiens)
Explore Q9NTI5 
Go to UniProtKB:  Q9NTI5
NIH Common Fund Data Resources
PHAROS:  Q9NTI5
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Wings apart-like protein homologC [auth E]33Homo sapiensMutation(s): 0 
Gene Names: WAPLFOEKIAA0261WAPAL
Find proteins for Q7Z5K2 (Homo sapiens)
Explore Q7Z5K2 
Go to UniProtKB:  Q7Z5K2
NIH Common Fund Data Resources
PHAROS:  Q7Z5K2
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IHP
Query on IHP

Download Ideal Coordinates CCD File 
D [auth A], E [auth B]INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.217 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.76α = 90
b = 162.368β = 90
c = 173.061γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2017-09-27
    Changes: Author supporting evidence, Derived calculations
  • Version 1.2: 2020-10-14
    Changes: Structure summary