5HDE

Crystal Structure of PTPN12 Catalytic Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of PTPN12 Catalytic Domain

Dong, H.Shi, J.Li, J.Li, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosine-protein phosphatase non-receptor type 12
A
307Homo sapiensMutation(s): 0 
Gene Names: PTPN12
EC: 3.1.3.48
Find proteins for Q05209 (Homo sapiens)
Go to Gene View: PTPN12
Go to UniProtKB:  Q05209
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSP
Query on CSP
A
L-PEPTIDE LINKINGC3 H8 N O5 P SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.164 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 136.010α = 90.00
b = 40.967β = 116.63
c = 75.686γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-01-05 
  • Released Date: 2017-01-18 
  • Deposition Author(s): Dong, H., Li, S., Shi, J.

Funding OrganizationLocationGrant Number
the National Natural Science Foundation of ChinaChina31300601
the PUMC Youth FundChina33320140186

Revision History 

  • Version 1.0: 2017-01-18
    Type: Initial release
  • Version 1.1: 2017-10-04
    Type: Data collection
  • Version 1.2: 2017-10-11
    Type: Data collection