5HAA

Crystal structure of mpy-RNase J, an archaeal RNase J from Methanolobus psychrophilus R15


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.904 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular insights into catalysis and processive exonucleolytic mechanisms of prokaryotic RNase J revealing striking parallels with that of eukaryotic Xrn1

Zheng, X.Feng, N.Li, D.F.Li, J.Dong, X.Z.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribonuclease J
A, B
470Methanolobus psychrophilus R15Mutation(s): 0 
Gene Names: rnj
EC: 3.1.-.-
Find proteins for K4MAF9 (Methanolobus psychrophilus R15)
Go to UniProtKB:  K4MAF9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.904 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.237 
  • Space Group: P 62 2 2
Unit Cell:
Length (Å)Angle (°)
a = 162.508α = 90.00
b = 162.508β = 90.00
c = 180.659γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2015-12-30 
  • Released Date: 2017-01-04 
  • Deposition Author(s): Feng, N., Li, D.F.

Revision History 

  • Version 1.0: 2017-01-04
    Type: Initial release