5HA6

Crystal structure of human syncytin-1 fusion subunit


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0006 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural and functional characterization of the human Syncytin 1 fusion protein

Aydin, H.Thavalingam, A.Bikopoulos, G.Sultana, A.Lee, J.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Syncytin-1
A, B
117Homo sapiensMutation(s): 1 
Gene Names: ERVW-1 (ERVWE1)
Find proteins for Q9UQF0 (Homo sapiens)
Go to UniProtKB:  Q9UQF0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0006 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.199 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 48.118α = 90.00
b = 48.118β = 90.00
c = 378.911γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
Cootmodel building
XDSdata reduction
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-12-30 
  • Released Date: 2017-08-02 
  • Deposition Author(s): Aydin, H., Lee, J.E.

Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanadaCIHR MOP-115066

Revision History 

  • Version 1.0: 2017-08-02
    Type: Initial release
  • Version 1.1: 2017-11-01
    Type: Author supporting evidence