5H9H | pdb_00005h9h

holo acyl carrier protein (holo-ACP) from Helicobacter pylori

PDB DOI: https://doi.org/10.2210/pdb5H9H/pdb

Classification: LIPID TRANSPORT
Organism(s): Helicobacter pylori P12
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-12-28 Released: 2016-12-28
Deposition Author(s): Zhang, L., Zhang, L., Shen, X., Jiang, H.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.252 (Depositor), 0.253 (DCC)
R-Value Work:
0.216 (Depositor), 0.214 (DCC)
R-Value Observed:
0.218 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

holo acyl carrier protein (holo-ACP) from Helicobacter pylori

Zhang, L., Zhang, L., Shen, X., Jiang, H.

To be published.

Macromolecule Content

Total Structure Weight: 28.33 kDa
Atom Count: 1,802
Modeled Residue Count: 223
Deposited Residue Count: 249
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl carrier protein	A, B, C	83	Helicobacter pylori P12	Mutation(s): 0 Gene Names: acpP
UniProt
Find proteins for B6JLE2 (Helicobacter pylori (strain P12)) Explore B6JLE2 Go to UniProtKB: B6JLE2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B6JLE2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
4HH Query on 4HH	A, B, C	L-PEPTIDE LINKING	C₁₄ H₂₈ N₃ O₉ P S		SER

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.252 (Depositor), 0.253 (DCC)
R-Value Work: 0.216 (Depositor), 0.214 (DCC)
R-Value Observed: 0.218 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.344	α = 90
b = 50.344	β = 90
c = 73.3	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2016-12-28

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	21210003
National Natural Science Foundation of China	China	21572133
National Natural Science Foundation of China	China	91413102

Revision History (Full details and data files)

Version 1.0: 2016-12-28
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.