5H94

Crystal structure of Swine MHC CLASSI for 1.48 angstroms


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.150 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structural and Biochemical Analyses of Swine Major Histocompatibility Complex Class I Complexes and Prediction of the Epitope Map of Important Influenza A Virus Strains

Fan, S.Wu, Y.Wang, S.Wang, Z.Jiang, B.Liu, Y.Liang, R.Zhou, W.Zhang, N.Xia, C.

(2016) J.Virol. 90: 6625-6641


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MHC class I antigen
A, D
275Sus scrofaMutation(s): 0 
Gene Names: SLA-1
Find proteins for A0A0N9JT91 (Sus scrofa)
Go to UniProtKB:  A0A0N9JT91
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, E
98Sus scrofaMutation(s): 0 
Gene Names: B2M
Find proteins for Q07717 (Sus scrofa)
Go to Gene View: B2M
Go to UniProtKB:  Q07717
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Nonapeptide from Influenza A virus HA protein
C, F
9Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for C4RUF0 (Influenza A virus)
Go to UniProtKB:  C4RUF0
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.150 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 206.453α = 90.00
b = 41.471β = 117.46
c = 106.735γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXphasing
PHASERdata scaling
HKL-2000data reduction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
The 863 Project of the China Ministry of Science and TechnologyChinaNo. 2013AA102503

Revision History 

  • Version 1.0: 2016-05-18
    Type: Initial release
  • Version 1.1: 2016-05-25
    Type: Database references
  • Version 1.2: 2016-07-27
    Type: Database references
  • Version 1.3: 2017-10-04
    Type: Data collection, Database references, Derived calculations