5H6Y | pdb_00005h6y

The BPTF Bromodomain Recognising H4K12Cr peptide

• PDB DOI: https://doi.org/10.2210/pdb5H6Y/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
• Mutation(s): No 


• Deposited: 2016-11-15 Released: 2017-11-15 
• Deposition Author(s): Wang, Y., Hao, Q.
• Funding Organization(s): University Grants Committee

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.224 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.187 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.189 (Depositor) 

Literature

The BPTF Bromodomain Recognising H4K12Cr peptide

Wang, Y., Hao, Q.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 14.04 kDa 
• Atom Count: 1,076 
• Modeled Residue Count: 120 
• Deposited Residue Count: 120 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleosome-remodeling factor subunit BPTF	A	117	Homo sapiens	Mutation(s): 0  Gene Names: BPTF, FAC1, FALZ
UniProt & NIH Common Fund Data Resources
Find proteins for Q12830 (Homo sapiens) Explore Q12830  Go to UniProtKB:  Q12830
PHAROS:  Q12830 GTEx:  ENSG00000171634

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-KCR-GLY	B	3	Homo sapiens	Mutation(s): 0

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
KCR	B	L-PEPTIDE LINKING	C10 H18 N2 O3		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.224 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.187 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.189 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.35	α = 90
b = 71.186	β = 90
c = 27.255	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-11-15 
Deposition Author(s): Wang, Y., Hao, Q.

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Funding Organization	Location	Grant Number
University Grants Committee	Hong Kong	HK-RGC C7037-14G

Revision History  

• Version 1.0: 2017-11-15
  Type: Initial release
  
• Version 1.1: 2025-04-09
  Changes: Data collection, Database references, Structure summary