5H5Z

Crystal structure of bony fish MHC class I, peptide and B2m II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Definition Of Bony Fish MHC Class I Illuminates Several Characteristics Of Peptide-Presentation And Light Chain Binding

Chen, Z.Qi, J.Gao, F.G.Xia, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MHC class I antigen
A
275Ctenopharyngodon idellaMutation(s): 0 
Gene Names: UAA106
Find proteins for Q65XY8 (Ctenopharyngodon idella)
Go to UniProtKB:  Q65XY8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B
98Ctenopharyngodon idellaMutation(s): 1 
Gene Names: B2m
Find proteins for Q6L7B0 (Ctenopharyngodon idella)
Go to UniProtKB:  Q6L7B0
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
peptide chain
C
9Spring viremia of carp virusMutation(s): 0 
Gene Names: L
Find proteins for Q91DR9 (Spring viremia of carp virus)
Go to UniProtKB:  Q91DR9
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.171 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 119.350α = 90.00
b = 50.650β = 129.37
c = 90.310γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PHASERphasing
REFMACrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
the State Key Program of the National Natural Science Foundation of ChinaChina31230074
the 973 Project of the China Ministry of Science and TechnologyChina2013CB835302

Revision History 

  • Version 1.0: 2017-11-22
    Type: Initial release