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Download EndnoteCrystal structure of hSIRT3 in complex with a specific agonist Amiodarone hydrochloride
Zhang, S., Fu, L., Liu, J., Liu, B.To be published.
5H4D
Crystal structure of hSIRT3 in complex with a specific agonist Amiodarone hydrochloride
- DOI: 10.2210/pdb5H4D/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Deposited: 2016-10-31 Released: 2017-11-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.372
- R-Value Work: 0.213
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| NAD-dependent protein deacetylase sirtuin-3, mitochondrial | A, H | 271 | Homo sapiens | Mutation(s): 0 Gene Names: SIRT3 (SIR2L3) EC: 3.5.1.- |
Find proteins for Q9NTG7 (Homo sapiens) Go to Gene View: SIRT3 Go to UniProtKB: Q9NTG7 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| ARG-HIS-LYS | D, C | 3 | N/A | Mutation(s): 0 |
| Protein Feature View is not available: No corresponding UniProt sequence found. | ||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | A, H | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| BBI Query on BBI | A, H | (2-butyl-1-benzofuran-3-yl){4-[2-(diethylamino)ethoxy]-3,5-diiodophenyl}methanone C25 H29 I2 N O3 IYIKLHRQXLHMJQ-UHFFFAOYSA-N |  | Ligand Interaction | |
| FDL Query on FDL | C, D | N~6~-acetyl-N-(4-methyl-2-oxo-2H-chromen-7-yl)-L-lysinamide C18 H23 N3 O4 CDFJPCDMYIJWOC-HNNXBMFYSA-N |  | Ligand Interaction | |
| NAD Query on NAD | A, H | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | Ligand Interaction | |
| MG Query on MG | A, H | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| PEG Query on PEG | H | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.372
- R-Value Work: 0.213
- Space Group: H 3
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 114.560 | α = 90.00 |
| b = 114.560 | β = 90.00 |
| c = 123.404 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| MOLREP | phasing |
| HKL-2000 | data collection |
| HKL-2000 | data scaling |
| REFMAC | refinement |
