Crystal structure of hSIRT3 in complex with a specific agonist Amiodarone hydrochloride
Zhang, S., Fu, L., Liu, J., Liu, B.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NAD-dependent protein deacetylase sirtuin-3, mitochondrial | A, H | 271 | Homo sapiens | Mutation(s): 0  Gene Names: SIRT3, SIR2L3 EC: 3.5.1 (PDB Primary Data), 2.3.1.286 (UniProt) | ![]() |
Find proteins for Q9NTG7 (Homo sapiens) Explore Q9NTG7  Go to UniProtKB:  Q9NTG7 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  Q9NTG7 GTEx:  ENSG00000142082 | |||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ARG-HIS-LYS | C, D | 3 | Homo sapiens | Mutation(s): 0  | ![]() |
Protein Feature ViewExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAD Query on NAD | A, H | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N | Ligand Interaction | ||
BBI Query on BBI | A, H | (2-butyl-1-benzofuran-3-yl){4-[2-(diethylamino)ethoxy]-3,5-diiodophenyl}methanone C25 H29 I2 N O3 IYIKLHRQXLHMJQ-UHFFFAOYSA-N | Ligand Interaction | ||
FDL Query on FDL | C, D | N~6~-acetyl-N-(4-methyl-2-oxo-2H-chromen-7-yl)-L-lysinamide C18 H23 N3 O4 CDFJPCDMYIJWOC-HNNXBMFYSA-N | Ligand Interaction | ||
PEG Query on PEG | H | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | Ligand Interaction | ||
ZN Query on ZN | A, H | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | Ligand Interaction | ||
MG Query on MG | A, H | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 114.56 | α = 90 |
b = 114.56 | β = 90 |
c = 123.404 | γ = 120 |
Software Name | Purpose |
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HKL-2000 | data collection |
HKL-2000 | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
MOLREP | phasing |