5GTZ

Crystal structure of EGFR 696-1022 T790M in complex with JTS-1-39


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.999 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of EGFR 696-1022 T790M in complex with JTS-1-39

Yan, X.E.Yun, C.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Epidermal growth factor receptor
A
331Homo sapiensMutation(s): 1 
Gene Names: EGFR (ERBB, ERBB1, HER1)
EC: 2.7.10.1
Find proteins for P00533 (Homo sapiens)
Go to Gene View: EGFR
Go to UniProtKB:  P00533
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
81C
Query on 81C

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Download CCD File 
A
N-[5-[[5-chloranyl-4-[(2-propan-2-ylsulfonylphenyl)amino]pyrimidin-2-yl]amino]-2-(4-ethylpiperazin-1-yl)-4-methoxy-phenyl]prop-2-enamide
C29 H36 Cl N7 O4 S
ISCOXTRBFQCVIH-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.999 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.189 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 146.177α = 90.00
b = 146.177β = 90.00
c = 146.177γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
PHENIXrefinement
PHASERphasing
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-08-24 
  • Released Date: 2017-09-06 
  • Deposition Author(s): Yan, X.E., Yun, C.H.

Revision History 

  • Version 1.0: 2017-09-06
    Type: Initial release