5GRQ

Crystal Structure of DHB domain of Daxx in complex with an ATRX peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.584 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Crystal Structure of DHB domain of Daxx in complex with an ATRX peptide

Li, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Death domain-associated protein 6
A, B
90Homo sapiensMutation(s): 0 
Gene Names: DAXX (BING2, DAP6)
Find proteins for Q9UER7 (Homo sapiens)
Go to Gene View: DAXX
Go to UniProtKB:  Q9UER7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Transcriptional regulator ATRX
C, D
30Homo sapiensMutation(s): 0 
Gene Names: ATRX (RAD54L, XH2)
EC: 3.6.4.12
Find proteins for P46100 (Homo sapiens)
Go to Gene View: ATRX
Go to UniProtKB:  P46100
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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A, B, C
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

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A, C
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

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A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.584 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.158 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 53.428α = 90.00
b = 56.217β = 90.00
c = 102.917γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHENIXrefinement
HKL-3000data reduction
SHELXDEphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-08-12 
  • Released Date: 2017-09-27 
  • Deposition Author(s): Li, H.

Revision History 

  • Version 1.0: 2017-09-27
    Type: Initial release
  • Version 2.0: 2017-10-18
    Type: Advisory, Atomic model, Database references, Polymer sequence, Source and taxonomy, Structure summary