Macromolecule Content

Total Structure Weight: 93.01 kDa
Atom Count: 6,889
Modelled Residue Count: 755
Deposited Residue Count: 793
Unique protein chains: 1

5GR5

Crystal structure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142

PDB DOI: https://doi.org/10.2210/pdb5GR5/pdb

Classification: TRANSFERASE
Organism(s): Crocosphaera subtropica ATCC 51142
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2016-08-08 Released: 2017-08-16
Deposition Author(s): Suzuki, R., Suzuki, E.
Funding Organization(s): Shimadzu Science Foundation, JSPS KAKENHI

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.187
R-Value Work: 0.151
R-Value Observed: 0.153

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142

Hayashi, M., Suzuki, R., Colleoni, C., Ball, S.G., Fujita, N., Suzuki, E.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1,4-alpha-glucan branching enzyme GlgB	A	793	Crocosphaera subtropica ATCC 51142	Mutation(s): 1 Gene Names: glgB, glgB1, cce_2248 EC: 2.4.1.18
UniProt
Find proteins for B1WPM8 (Crocosphaera subtropica (strain ATCC 51142 / BH68)) Explore B1WPM8 Go to UniProtKB: B1WPM8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B1WPM8
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A]	B [auth A], C [auth A], D [auth A], E [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A]	F [auth A], G [auth A], H [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.187
R-Value Work: 0.151
R-Value Observed: 0.153
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 133.87	α = 90
b = 133.87	β = 90
c = 185.01	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2017-08-16

Deposition Author(s):

Funding Organization	Location	Grant Number
Shimadzu Science Foundation	Japan	120003
JSPS KAKENHI	Japan	15K18685
JSPS KAKENHI	Japan	25440193

Revision History (Full details and data files)

Version 1.0: 2017-08-16
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.