5GR5

Crystal structure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.151 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142

Hayashi, M.Suzuki, R.Colleoni, C.Ball, S.G.Fujita, N.Suzuki, E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
1,4-alpha-glucan branching enzyme GlgB
A
793Cyanothece sp. (strain ATCC 51142)Gene Names: glgB (glgB1)
EC: 2.4.1.18
Find proteins for B1WPM8 (Cyanothece sp. (strain ATCC 51142))
Go to UniProtKB:  B1WPM8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.151 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 133.870α = 90.00
b = 133.870β = 90.00
c = 185.010γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
MOLREPphasing
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-08-08 
  • Released Date: 2017-08-16 
  • Deposition Author(s): Suzuki, R., Suzuki, E.

Funding OrganizationCountryGrant Number
Shimadzu Science FoundationJapan120003
JSPS KAKENHIJapan15K18685
JSPS KAKENHIJapan25440193

Revision History 

  • Version 1.0: 2017-08-16
    Type: Initial release