5GOL | pdb_00005gol

Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain F598H mutant

• PDB DOI: https://doi.org/10.2210/pdb5GOL/pdb

• Classification: TRANSFERASE
• Organism(s): Neomoorella thermoacetica
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2016-07-27 Released: 2017-09-06 
• Deposition Author(s): Yuan, H., Wei, Y.Z., Tan, X.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free: 
  0.240 (Depositor), 0.241 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.207 (DCC) 
• R-Value Observed: 
  0.205 (Depositor) 

Literature

Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain F598H mutant

Yuan, H., Wei, Y.Z., Tan, X.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 4-mer - A4 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 59 kDa 
• Atom Count: 4,396 
• Modeled Residue Count: 540 
• Deposited Residue Count: 540 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha	A, B, C, D	135	Neomoorella thermoacetica	Mutation(s): 1  EC: 2.3.1.169
UniProt
Find proteins for P27988 (Moorella thermoacetica) Explore P27988  Go to UniProtKB:  P27988

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth A], J [auth B], K [auth C], L [auth D]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
NI	F [auth A], G [auth A], H [auth B], I [auth B]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free:  0.240 (Depositor), 0.241 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.207 (DCC) 
• R-Value Observed: 0.205 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.839	α = 90
b = 58.569	β = 102.83
c = 120.729	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-09-06 
Deposition Author(s): Yuan, H., Wei, Y.Z., Tan, X.S.

Revision History  

• Version 1.0: 2017-09-06
  Type: Initial release
  
• Version 1.1: 2024-11-13
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary