5GO6 | pdb_00005go6

Structure of sortase E T196V mutant from Streptomyces avermitilis

• PDB DOI: https://doi.org/10.2210/pdb5GO6/pdb

• Classification: HYDROLASE
• Organism(s): Streptomyces avermitilis MA-4680 = NBRC 14893
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2016-07-26 Released: 2017-07-26 
• Deposition Author(s): Das, S., Pawale, V.S., Dadireddy, V., Roy, R.P., Ramakumar, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.206 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.173 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.174 (Depositor) 

Starting Model: experimental

Literature

Structure of sortase E T196V mutant from Streptomyces avermitilis

Das, S., Pawale, V.S., Dadireddy, V., Roy, R.P., Ramakumar, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 22.52 kDa 
• Atom Count: 1,309 
• Modeled Residue Count: 150 
• Deposited Residue Count: 201 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative secreted protein	A	201	Streptomyces avermitilis MA-4680 = NBRC 14893	Mutation(s): 1  Gene Names: SAVERM_4333
UniProt
Find proteins for Q82FC3 (Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)) Explore Q82FC3  Go to UniProtKB:  Q82FC3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.206 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.173 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.174 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.983	α = 90
b = 84.983	β = 90
c = 48.005	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-07-26 
Deposition Author(s): Das, S., Pawale, V.S., Dadireddy, V., Roy, R.P., Ramakumar, S.

Revision History  

• Version 1.0: 2017-07-26
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description