5GNR

the structure of mini-MFN1 K88A in complex with GDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.302 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

BDLP-like folding of Mitofusin 1

Qi, Y.Yan, L.Yu, C.Lou, Z.Rao, Z.Hu, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Mitofusin-1A421Homo sapiensMutation(s): 1 
Gene Names: MFN1
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IWA4 (Homo sapiens)
Explore Q8IWA4 
Go to UniProtKB:  Q8IWA4
PHAROS:  Q8IWA4
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP (Subject of Investigation/LOI)
Query on GDP

Download Ideal Coordinates CCD File 
B [auth A]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.302 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.225 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.34α = 90
b = 74.975β = 90
c = 94.451γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data processing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31225006
an International Early Career Scientist grant from Howard Hughes Medical Institute.Armenia--

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-23
    Type: Initial release
  • Version 1.1: 2017-12-06
    Changes: Database references, Derived calculations