Download MendeleyCrystal structure of a Z-ring associated protein from Salmonella typhimurium
Choi, H., Yoon, H.J., Lee, H.H.To be published.
5GNP
Crystal structure of a Z-ring associated protein from Salmonella typhimurium
- PDB DOI: https://doi.org/10.2210/pdb5GNP/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-07-22 Released: 2017-07-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.283
- R-Value Work: 0.251
- R-Value Observed: 0.253
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cell division protein ZapD | 245 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0 Gene Names: zapD, STM0139 |  | |
UniProt | |||||
Find proteins for P67693 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P67693 Go to UniProtKB: P67693 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P67693 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLI Query on MLI | B [auth A] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.283
- R-Value Work: 0.251
- R-Value Observed: 0.253
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.239 | α = 90 |
| b = 84.239 | β = 90 |
| c = 149.865 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2017-07-26 Deposition Author(s): Choi, H., Yoon, H.J., Lee, H.H.
Revision History (Full details and data files)
- Version 1.0: 2017-07-26
Type: Initial release - Version 1.1: 2017-11-15
Changes: Source and taxonomy - Version 1.2: 2024-03-20
Changes: Data collection, Database references
