5GLE | pdb_00005gle

The structure of Vibrio anguillarum775 AngB-ICL

• PDB DOI: https://doi.org/10.2210/pdb5GLE/pdb

• Classification: LYASE
• Organism(s): Vibrio anguillarum 775
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2016-07-10 Released: 2017-10-25 
• Deposition Author(s): Du, J.S., Ma, Q.G.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.230 (Depositor), 0.224 (DCC) 
• R-Value Work: 
  0.206 (Depositor) 
• R-Value Observed: 
  0.207 (Depositor) 

Starting Model: experimental

Literature

The structure of Vibrio anguillarum775 AngB-ICL protein

Du, J.S., Deng, T., Ma, Q.G.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 46.83 kDa 
• Atom Count: 3,491 
• Modeled Residue Count: 416 
• Deposited Residue Count: 416 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ischorismate lyase	A	208	Vibrio anguillarum 775	Mutation(s): 0  Gene Names: G, angB

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ischorismate lyase	B	208	Vibrio anguillarum 775	Mutation(s): 1  Gene Names: G, angB

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.230 (Depositor), 0.224 (DCC) 
• R-Value Work:  0.206 (Depositor) 
• R-Value Observed: 0.207 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 140.19	α = 90
b = 140.19	β = 90
c = 59.3	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data processing
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-10-25 
Deposition Author(s): Du, J.S., Ma, Q.G.

Revision History  

• Version 1.0: 2017-10-25
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description