5GKW

crystal structure of SZ529 complex with (R,R)-cyclopentanediol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.228 

wwPDB Validation 3D Report Full Report



Literature

crystal structure of SZ529 complex with (R,R)-cyclopentanediol

Wu, L.Sun, Z.T.Reetz, M.T.Zhou, J.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Limonene-1,2-epoxide hydrolaseAB155Rhodococcus erythropolisMutation(s): 4 
Gene Names: limA
EC: 3.3.2.8
Find proteins for Q9ZAG3 (Rhodococcus erythropolis)
Explore Q9ZAG3 
Go to UniProtKB:  Q9ZAG3
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
6VV
Query on 6VV

Download CCD File 
A
(1~{R},2~{R})-cyclopentane-1,2-diol
C5 H10 O2
VCVOSERVUCJNPR-RFZPGFLSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.228 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.856α = 90
b = 60.541β = 90
c = 119.272γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PHENIXphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-07-12
    Type: Initial release