5GJX

Crystal structure of DUCK MHC I for 2.06 angstrom


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Definition Of Duck MHC Class I For 2.06 Angstrom Explains its Resistance to Influenza A virus

Wu, Y.Xia, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MHC class I antigen
A
273Anas platyrhynchosMutation(s): 1 
Gene Names: Du5MHC I
Find proteins for Q6I7L2 (Anas platyrhynchos)
Go to UniProtKB:  Q6I7L2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B
104Anas platyrhynchosMutation(s): 0 
Gene Names: b2m
Find proteins for Q14U75 (Anas platyrhynchos)
Go to UniProtKB:  Q14U75
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ARG-LEU-ILE-GLN-ASN-SER-ILE-THR-ILE
C
9Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd)Mutation(s): 0 
Gene Names: NP
Find proteins for Q9Q0U8 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd))
Go to UniProtKB:  Q9Q0U8
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 46.487α = 90.00
b = 63.538β = 106.10
c = 79.954γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-07-02 
  • Released Date: 2017-05-10 
  • Deposition Author(s): Wu, Y., Xia, C.

Funding OrganizationLocationGrant Number
National Key Basic Research Program of ChinaChina2013CB835302
National Natural Science Foundation of ChinaChinaNo. 31572493

Revision History 

  • Version 1.0: 2017-05-10
    Type: Initial release