5GJX

Crystal structure of DUCK MHC I for 2.06 angstrom


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 

wwPDB Validation   3D Report Full Report



Literature

Structural Definition Of Duck MHC Class I For 2.06 Angstrom Explains its Resistance to Influenza A virus

Wu, Y.Xia, C.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
MHC class I antigenA273Anas platyrhynchosMutation(s): 1 
Gene Names: Du5MHC I
Find proteins for Q6I7L2 (Anas platyrhynchos)
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Go to UniProtKB:  Q6I7L2
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB104Anas platyrhynchosMutation(s): 0 
Gene Names: b2m
Find proteins for Q14U75 (Anas platyrhynchos)
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Go to UniProtKB:  Q14U75
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
ARG-LEU-ILE-GLN-ASN-SER-ILE-THR-ILEC9unidentified influenza virusMutation(s): 0 
Find proteins for Q9Q0U8 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd))
Explore Q9Q0U8 
Go to UniProtKB:  Q9Q0U8
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.487α = 90
b = 63.538β = 106.1
c = 79.954γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
REFMACrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-07-02 
  • Released Date: 2017-05-10 
  • Deposition Author(s): Wu, Y., Xia, C.

Funding OrganizationLocationGrant Number
National Key Basic Research Program of ChinaChina2013CB835302
National Natural Science Foundation of ChinaChinaNo. 31572493

Revision History 

  • Version 1.0: 2017-05-10
    Type: Initial release