5GJ7 | pdb_00005gj7

putative Acyl-CoA dehydrogenase

• PDB DOI: https://doi.org/10.2210/pdb5GJ7/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-06-28 Released: 2017-07-05 
• Deposition Author(s): Moon, H., Choe, J.
• Funding Organization(s): The university of seoul

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 
  0.224 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.196 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.198 (Depositor) 

Literature

Putative Acyl CoA dehydrogenase

Moon, H., Choe, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 87.71 kDa 
• Atom Count: 6,313 
• Modeled Residue Count: 776 
• Deposited Residue Count: 796 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA dehydrogenase type 2 domain protein	A, B	398	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446	Mutation(s): 0  Gene Names: Aaci_0955
UniProt
Find proteins for C8WV06 (Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / BCRC 14685 / JCM 5260 / KCTC 1825 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 / 104-IA)) Explore C8WV06  Go to UniProtKB:  C8WV06

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free:  0.224 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.196 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.198 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 155.691	α = 90
b = 69.384	β = 90
c = 83.255	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-07-05 
Deposition Author(s): Moon, H., Choe, J.

---

Funding Organization	Location	Grant Number
The university of seoul	Korea, Republic Of	--

Revision History  

• Version 1.0: 2017-07-05
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Derived calculations, Refinement description